Introduction
Patients and methods
Semisolid in vitro cultures
Molecular analysis
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Lab 1: ClinVar and dsSNP-NCBI (National Center for Biotechnology Information), COSMIC (Catalogue of Somatic Mutations in Cancer), EGB (Ensembl Genomes Browser), ESP (Exome Sequencing Project) g1000 (1000 genomes), cg69, PolyPhen (Polymorphism Phenotyping), SIFT (Sorting Intolerant from Tolerant), LRT and MutationTaster.
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Lab 2: SOPHiA DDM (Sophia Genetics Inc, Saint Sulpice, Switzerland), ExAC (Exome Aggregation Consortium), G1000 (1000 genomes), ESP (Exome Sequencing Project), COSMIC (Catalogue of Somatic Mutations in Cancer), ClinVar, dbSNP, CG69, dbNSFP (database of human nonsynonymous SNPs and their functional predictions), GnomAD (Genome Aggregation Database)
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Lab 3: ClinVar and dsSNP-NCBI (National Center for Biotechnology Information), COSMIC (Catalogue of Somatic Mutations in Cancer), ExAC (Exome Aggregation Consortium), gnomAD (Genome Aggregation Database), TOPMed, IARC TP53, Align-GVGD, SIFT (Sorting Intolerant from Tolerant) and MutationTaster.
Statistical analysis
Results
Cohort | ABCMML N = 531 | Texas [7] N = 213 | France [8] N = 312 | Spain [9] N = 558 | Düsseldorf [9] N = 274 | Pavia [11] N = 214 | Munich [11] N = 260 | Mayo [12] N = 324 |
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Age in years; median (range) | 72 (34–93) | 65 (20–88) | 74 (41–93) | 73 (19–99) | 70 (41–98) | 72 (28–99) | 74 (0.2–155) | 71 (18–95) |
Sex (male); n (%) | 337 (63) | 150 (70) | 210 (67) | 377 (68) | 191 (70) | 151 (71) | 190 (73) | 216 (67) |
WBC × 109/L; median (range) | 11.9 (1.6–271) | 20.4 (2.1–352) | 12.4 (2.0–367) | 10 (1–156) | 13 (1–150) | 9.8 (1.2–126) | 11.0 (2.0–87.0) | 12.3 (1.8–264.8) |
Hb g/dL; median (range) | 10.9 (4.3–16.5) | 10.2 (5.2–15.6) | 11.3 (5.3–16.9) | 11 (1–19) | 11 (2–17) | 11.6 (6–16.6) | 11.5 (5.9–17) | 10.8 (6.4–16.9) |
PLT × 109/L; Median (range) | 109 (1–1181) | 87 (4–706) | 120 (9–1098) | 123 (4–928) | 105 (1–979) | 124 (4–943) | 103 (3–1385) | 102 (10–840) |
PB blasts %; Median (range) | 0 (0–19) | 0 (0–22) | NA | NA | NA | NA | NA | 0 (0–19) |
BM blasts %; Median (range) | NA | 4 (0–19) | NA | 3 (0–19) | 6 (0–19) | 3 (1–18) | 6 (0–19) | 3 (0–19) |
LDH U/L; Median (range) | 251 (67–3380) | 783 (270–5310) | NA | 394 (104–2976) | 277 (97–7743) | NA | NA | 226 (84–1296) |
Intermediate + high risk karyotypea; n (%) | 81/278 (29) | 70/205 (34) | 60/295 (20) | 103/532 (19) | 86/232 (37) | 40/190 (21) | 42/260 (16) | 79/317 (25) |
Median survival (months) | 29 | 12 | 32 | 31 | 25 | 48 | 51 | 29 |
Molecular analysis by NGS | Yes | No | Yes | Yes | Yes | Yes | Yes | Yes |
Functional analysis by in vitro cultures | Yes | No | No | No | No | No | No | No |
Variables | All CMML patients (n = 531) | MP-CMML patients (n = 243) | MD-CMML patients (n = 288) | P-value |
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Age in years; median (range) | 72 (34–93) | 73 (34–92) | 72 (36–93) | 0.9282 |
Sex (male); n (%) | 337 (63) | 149 (61) | 188 (65) | 0.3445 |
WBC × 109/L; median (range) | 11.9 (1.6–271) | 25.2 (13.1–271) | 6.45 (1.6–12.9) | <0.0001 |
Hemoglobin g/dL, median (range) | 10.9 (4.3–16.5) | 10.9 (5.2–16.1) | 11 (4.3–16.5) | 0.8572 |
Platelets × 109/L; median (range) | 109 (1–1181) | 103 (3–1148) | 115 (2–1181) | 0.6312 |
PB blasts %; median (range) | 0 (0–19) | 0 (0–18) | 0 (0–19) | <0.0001 |
LDH; U/L; median (range) | 251 (67–3380) | 300 (67–1958) | 210 (102–3380) | <0.0001 |
Splenomegaly; n (%) | 87/241 (36) | 56/127 (44) | 31/114 (27) | 0.0064 |
Median survival (months) | 29 | 23 | 33 | 0.0001 |
Patients with mutations in RASopathy genes ≥5% VAF; n (%) | 92/209 (44) | 59/110 (54) | 33/99 (33) | 0.0032 |
Patients with spontaneous CFU-GM growth >20/100,000 PBMNC; n (%) | 52/158 (33) | 35/81 (43) | 17/77 (22) | 0.0047 |