What you will learn
After finishing this chapter, you will have a basic overview of the individual experimental work steps regarding the NGS library preparation workflow, the connection between the scientific or clinical question and the choice of the corresponding library preparation. For this purpose, the technical and molecular biological relevance of the individual work steps is briefly described.
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References
van Dijk EL, Jaszczyszyn Y, Thermes C. Library preparation methods for next-generation sequencing: tone down the bias. Exp Cell Res. 2014;322(1):12–20.
Head SR, Komori HK, LaMere SA, Whisenant T, Van Nieuwerburgh F, Salomon DR, et al. Library construction for next-generation sequencing: overviews and challenges. Biotechniques. 2014;56(2):61–4, 6, 8, passim.
Sakamoto Y, Sereewattanawoot S, Suzuki A. A new era of long-read sequencing for cancer genomics. J Hum Genet. 2020;65(1):3–10.
Trombetta JJ, Gennert D, Lu D, Satija R, Shalek AK, Regev A. Preparation of Single-Cell RNA-Seq Libraries for Next Generation Sequencing. Curr Protoc Mol Biol. 2014;107:4–22. 1-17.
Jemt A, Salmen F, Lundmark A, Mollbrink A, Fernandez Navarro J, Stahl PL, et al. An automated approach to prepare tissue-derived spatially barcoded RNA-sequencing libraries. Sci Rep. 2016;6:37137.
Jemt A, Salmen F, Lundmark A, Mollbrink A, Navarro JF, Stahl PL, et al. Corrigendum: an automated approach to prepare tissue-derived spatially barcoded RNA-sequencing libraries. Sci Rep. 2017;7:41109.
Greenwald WW, Li H, Benaglio P, Jakubosky D, Matsui H, Schmitt A, et al. Subtle changes in chromatin loop contact propensity are associated with differential gene regulation and expression. Nat Commun. 2019;10(1):1054.
Podnar J, Deiderick H, Huerta G, Hunicke-Smith S. Next-Generation Sequencing RNA-Seq Library Construction. Curr Protoc Mol Biol. 2014;106:4–21. 1-19.
Acknowledgements
We are grateful to Dr. Ines Böhme (Institute of Biochemistry (Emil-Fischer Center), Friedrich–Alexander University Erlangen–Nürnberg, Erlangen, Germany) for reviewing this chapter and Alexander Oliver Matthies (Institute of Biochemistry (Emil-Fischer Center), Friedrich–Alexander University Erlangen–Nürnberg, Erlangen, Germany) for critically reading this text.
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Kappelmann-Fenzl, M. (2021). Library Construction for NGS. In: Kappelmann-Fenzl, M. (eds) Next Generation Sequencing and Data Analysis. Learning Materials in Biosciences. Springer, Cham. https://doi.org/10.1007/978-3-030-62490-3_3
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DOI: https://doi.org/10.1007/978-3-030-62490-3_3
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