Skip to main content

The Structure of Human α-Galactosidase A and Implications for Fabry Disease

  • Chapter
  • First Online:

Abstaract

The three-dimensional structure of human α-galactosidase A has been determined by x-ray crystallography, revealing the molecular and mechanistic basis for the defects leading to Fabry disease. The structure showed that the active site of the enzyme is formed from the C-terminal ends of seven beta strands in the first domain, a (β/α)8 barrel. The structure of the complex of α-galactosidase A with ligand bound shows that the enzyme makes specific contacts with every functional group on the ligand. The enzyme uses a double displacement reaction mechanism to cleave terminal α-galactosides off of the substrate. Mapping the mutations that lead to Fabry disease onto the structure reveals three groups of mutations: those that perturb the active site of the enzyme, those that affect the hydrophobic core of the protein, and those that have other effects on the structure. Most of the mutations that lead to disease alter the hydrophobic core of α-galactosidase A, thus Fabry disease is usually caused by misfolding of the mutant polypeptide.

This is a preview of subscription content, log in via an institution.

Buying options

Chapter
USD   29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD   139.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD   179.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD   249.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Learn about institutional subscriptions

References

  1. Garman SC, Garboczi DN (2004) The molecular defect leading to Fabry disease: structure of human α-galactosidase. J Mol Biol 337(2):319–335

    Article  PubMed  CAS  Google Scholar 

  2. Fujimoto Z, Kaneko S, Momma M, Kobayashi H, Mizuno H (2003) Crystal structure of rice α-galactosidase complexed with D-galactose. J Biol Chem 278(22):20313–20318

    Article  PubMed  CAS  Google Scholar 

  3. Golubev AM, Nagem RA, Brandao Neto JR, Neustroev KN, Eneyskaya EV, Kulminskaya AA et al (2004) Crystal structure of α-galactosidase from Trichoderma reesei and its complex with galactose: implications for catalytic mechanism. J Mol Biol 339(2):413–422

    Article  PubMed  CAS  Google Scholar 

  4. Chen Y, Jin M, Egborge T, Coppola G, Andre J, Calhoun DH (2000) Expression and characterization of glycosylated and catalytically active recombinant human α-galactosidase A produced in Pichia pastoris. Protein Expr Purif 20(3):472–484

    Article  PubMed  CAS  Google Scholar 

  5. Matsuura F, Ohta M, Ioannou YA, Desnick RJ (1998) Human α-galactosidase A: characterization of the N-linked oligosaccharides on the intracellular and secreted glycoforms overexpressed by Chinese hamster ovary cells. Glycobiology 8(4):329–339

    Article  PubMed  CAS  Google Scholar 

  6. Ioannou YA, Zeidner KM, Grace ME, Desnick RJ (1998) Human α-galactosidase A: glycosylation site 3 is essential for enzyme solubility. Biochem J 332:789–797

    PubMed  CAS  Google Scholar 

  7. Lee K, Jin X, Zhang K, Copertino L, Andrews L, Baker-Malcolm J et al (2003) A biochemical and pharmacological comparison of enzyme replacement therapies for the glycolipid storage disorder Fabry disease. Glycobiology 13(4):305–313

    Article  PubMed  Google Scholar 

  8. Lieberman RL, D’Aquino JA, Ringe D, Petsko GA (2009) The effects of pH and iminosugar pharmacological chaperones on lysosomal glycosidase structure and stability. Biochemistry 48(22):4816–4827

    Article  PubMed  CAS  Google Scholar 

  9. Ishii S, Chang HH, Kawasaki K, Yasuda K, Wu HL, Garman SC et al (2007) Mutant α-galactosidase A enzymes identified in Fabry disease patients with residual enzyme activity: biochemical characterization and restoration of normal intracellular processing by 1-deoxygalactonojirimycin. Biochem J 406(2):285–295

    Article  PubMed  CAS  Google Scholar 

  10. Koshland DE (1953) Stereochemistry and the mechanism of enzymatic reactions. Biol Rev Cambridge Philos Soc 28:416–436

    Article  CAS  Google Scholar 

  11. Guce AI, Clark NE, Salgado EN, Vanern DR, Kulminskaya AA, Brumer H 3rd, Garman SC (2010) Catalytic mechanism of human α-galactosidase. J Biol Chem 285(6):3625–3632

    Google Scholar 

  12. Blanch LC, Meaney C, Morris CP (1996) A sensitive mutation screening strategy for Fabry disease: detection of nine mutations in the α-galactosidase A gene. Hum Mutat 8(1):38–43

    Article  PubMed  CAS  Google Scholar 

  13. Eng CM, Ashley GA, Burgert TS, Enriquez AL, D’Souza M, Desnick RJ (1997) Fabry disease: thirty-five mutations in the α-galactosidase A gene in patients with classic and variant phenotypes. Mol Med 3(3):174–182

    PubMed  CAS  Google Scholar 

  14. Shabbeer J, Yasuda M, Luca E, Desnick RJ (2002) Fabry disease: 45 novel mutations in the α-galactosidase A gene causing the classical phenotype. Mol Genet Metab 76(1):23–30

    Article  PubMed  CAS  Google Scholar 

  15. Tse KC, Chan KW, Tin VP, Yip PS, Tang S, Li FK et al (2003) Clinical features and genetic analysis of a Chinese kindred with Fabry’s disease. Nephrol Dial Transplant 18(1):182–186

    Article  PubMed  CAS  Google Scholar 

  16. Garzuly F, Marodi L, Erdos M, Grubits J, Varga Z, Gelpi E et al (2005) Megadolichobasilar anomaly with thrombosis in a family with Fabry’s disease and a novel mutation in the α-galactosidase A gene. Brain 128(Pt 9):2078–2083

    Article  PubMed  Google Scholar 

  17. Teraguchi M, Tanaka A, Akiola K, Lan HT, Nishi Y, Yamano T, Yoshikawa J (2004) Fabry disease female proband with clinical manifestations similar to hypertrophic cardiomyopathy. Jpn Heart J 45(4):685–689

    Article  Google Scholar 

  18. Nakao S, Takenaka T, Maeda M, Kodama C, Tanaka A, Tahara M et al (1995) An atypical variant of Fabry’s disease in men with left ventricular hypertrophy. N Engl J Med 333(5):288–293

    Article  PubMed  CAS  Google Scholar 

  19. Madsen KM, Hasholt L, Sorensen SA, Fermer ML, Dahl N (1995) Two novel mutations (L32P) and (G85N) among five different missense mutations in six Danish families with Fabry’s disease. Hum Mutat 5(3):277–278

    Article  PubMed  CAS  Google Scholar 

  20. Eng CM, Resnick-Silverman LA, Niehaus DJ, Astrin KH, Desnick RJ (1993) Nature and frequency of mutations in the α-galactosidase A gene that cause Fabry disease. Am J Hum Genet 53(6):1186–1197

    PubMed  CAS  Google Scholar 

  21. Davies J, Christomanou H, Winchester B, Malcolm S (1994) Detection of 8 new mutations in the α-galactosidase A gene in Fabry disease. Hum Mol Genet 3(4):667–669

    Article  PubMed  CAS  Google Scholar 

  22. Koide T, Ishiura M, Iwai K, Inoue M, Kaneda Y, Okada Y et al (1990) A case of Fabry’s disease in a patient with no α-galactosidase A activity caused by a single amino acid substitution of Pro-40 by Ser. FEBS Lett 259(2):353–356

    Article  PubMed  CAS  Google Scholar 

  23. Ashton-Prolla P, Tong B, Shabbeer J, Astrin KH, Eng CM, Desnick RJ (2000) Fabry disease: twenty-two novel mutations in the α-galactosidase A gene and genotype/phenotype correlations in severely and mildly affected hemizygotes and heterozygotes. J Investig Med 48(4):227–235

    PubMed  CAS  Google Scholar 

  24. Davies JP, Eng CM, Hill JA, Malcolm S, MacDermot K, Winchester B et al (1996) Fabry disease: fourteen α-galactosidase A mutations in unrelated families from the United Kingdom and other European countries. Eur J Hum Genet 4(4):219–224

    PubMed  CAS  Google Scholar 

  25. Rosenthal D, Lien YH, Lager D, Lai LW, Shang S, Leung N et al (2004) A novel α-galactosidase A mutant (M42L) identified in a renal variant of Fabry disease. Am J Kidney Dis 44(5):e85–e89

    PubMed  Google Scholar 

  26. Iga MI, Okayama A, Matsuyama M, Sasaki T, Murai K, Hashida S, Morishita K, Tsubouchi H (2001) Disease: Fabry disease. Hum Genet 109:126

    Google Scholar 

  27. Germain DP, Shabbeer J, Cotigny S, Desnick RJ (2002) Fabry disease: twenty novel α-galactosidase A mutations and genotype-phenotype correlations in classical and variant phenotypes. Mol Med 8(6):306–312

    PubMed  CAS  Google Scholar 

  28. Sakuraba H, Oshima A, Fukuhara Y, Shimmoto M, Nagao Y, Bishop DF et al (1990) Identification of point mutations in the α-galactosidase A gene in classical and atypical hemizygotes with Fabry disease. Am J Hum Genet 47(5):784–789

    PubMed  CAS  Google Scholar 

  29. Blaydon D, Hill J, Winchester B (2001) Fabry disease: 20 novel GLA mutations in 35 families. Hum Mutat 18(5):459

    Article  PubMed  CAS  Google Scholar 

  30. Cooper A, Cooper JA, Wraith JE (2000) Human gene mutations in GLA. Hum Genet 107(5):535–536

    Google Scholar 

  31. Rodriquez-Mari A, Coll MJ, Chabas A (2003) Molecular analysis in Fabry disease in Spain: fifteen novel GLA mutations and identification of a homozygous female. Hum Mutat 22(3):258

    Article  Google Scholar 

  32. Ashley GA, Shabbeer J, Yasuda M, Eng CM, Desnick RJ (2001) Fabry disease: twenty novel α-galactosidase A mutations causing the classical phenotype. J Hum Genet 46(4):192–196

    Article  PubMed  CAS  Google Scholar 

  33. Spada M, Pagliardini S, Yasuda M, Tukel T, Thiagarajan G, Sakuraba H et al (2006) High incidence of later-onset fabry disease revealed by newborn screening. Am J Hum Genet 79(1):31–40

    Article  PubMed  CAS  Google Scholar 

  34. Eng CM, Niehaus DJ, Enriquez AL, Burgert TS, Ludman MD, Desnick RJ (1994) Fabry disease: twenty-three mutations including sense and antisense CpG alterations and identification of a deletional hot-spot in the α-galactosidase A gene. Hum Mol Genet 3(10):1795–1799

    Article  PubMed  CAS  Google Scholar 

  35. Topaloglu AK, Ashley GA, Tong B, Shabbeer J, Astrin KH, Eng CM et al (1999) Twenty novel mutations in the α-galactosidase A gene causing Fabry disease. Mol Med 5(12):806–811

    PubMed  CAS  Google Scholar 

  36. Shabbeer J, Robinson M, Desnick RJ (2005) Detection of α-galactosidase A mutations causing Fabry disease by denaturing high performance liquid chromatography. Hum Mutat 25(3):299–305

    Article  PubMed  CAS  Google Scholar 

  37. Schafer E, Baron K, Widmer U, Deegan P, Neumann HP, Sunder-Plassmann G et al (2005) Thirty-four novel mutations of the GLA gene in 121 patients with Fabry disease. Hum Mutat 25(4):412

    Article  PubMed  Google Scholar 

  38. Chen C-H, Shyu P-W, Wu S-J, Sheu S-S, Desnick RJ, Hsiao K-J (1997) Identification of a novel point mutation (S65T) in α-galactosidase A gene in Chinese patients with Fabry disease. Hum Mutat 11:328–330

    Article  Google Scholar 

  39. Ishii S, Sakuraba H, Suzuki Y (1992) Point mutations in the upstream region of the α-galactosidase A gene exon 6 in an atypical variant of Fabry disease. Hum Genet 89(1):29–32

    Article  PubMed  CAS  Google Scholar 

  40. Okumiya T, Kawamura O, Itoh K, Kase R, Ishii S, Kamei S et al (1998) Novel missense mutation (M72V) of α-galactosidase gene and its expression product in an atypical Fabry hemizygote. Hum Mutat (Suppl 1):S213–S216

    Google Scholar 

  41. Slee PH, van Boven LJ, Slee DS (2000) Fabry disease: data from four families. Ned Tijdschr Geneeskd 144(50):2412–2415

    PubMed  CAS  Google Scholar 

  42. Guffon N, Froissart R, Chevalier-Porst F, Maire I (1998) Mutation analysis in 11 French patients with Fabry disease. Hum Mutat (Suppl 1):S288–S290

    Google Scholar 

  43. Takata T, Okumiya T, Hayashibe H, Shimmoto M, Kase R, Itoh K et al (1997) Screening and detection of gene mutations in Japanese patients with Fabry disease by non-radioactive single-stranded conformation polymorphism analysis. Brain Dev 19(2):111–116

    Article  PubMed  CAS  Google Scholar 

  44. Eng C, Smith DP, Mulligan LM, Nagai MA, Healey CS, Ponder MA et al (1994) Point mutation within the tyrosine kinase domain of the RET proto-oncogene in multiple endocrine neoplasia type 2B and related sporadic tumours. Hum Mol Genet 3(2):237–241

    Article  PubMed  CAS  Google Scholar 

  45. Lee JK, Kim GH, Kim JS, Kim KK, Lee MC, Yoo HW (2000) Identification of four novel mutations in five unrelated Korean families with Fabry disease. Clin Genet 58(3):228–233

    Article  PubMed  CAS  Google Scholar 

  46. Kimura K, Sato-Matsumura KC, Nakamura H, Onodera Y, Morita K, Enami N et al (2002) A novel A97P amino acid substitution in α-galactosidase A leads to a classical Fabry disease with cardiac manifestations. Br J Dermatol 147:545–548

    Article  PubMed  CAS  Google Scholar 

  47. Lorenz M, Hauser AC, Puspok-Schwarz M, Kotanko P, Arias I, Zodl H et al (2003) Anderson-Fabry disease in Austria. Wien Klin Wochenschr 115(7–8):235–240

    Article  PubMed  Google Scholar 

  48. Whybra C, Kampmann C, Willers I, Davies J, Winchester B, Kriegsmann J et al (2001) Anderson-Fabry disease: clinical manifestations of disease in female heterozygotes. J Inherit Metab Dis 24(7):715–724

    Article  PubMed  CAS  Google Scholar 

  49. Okumiya T, Ishii S, Kase R, Kamei S, Sakuraba H, Suzuki Y (1995) α-galactosidase gene mutations in Fabry disease: heterogeneous expressions of mutant enzyme proteins. Hum Genet 95(5):557–561

    Article  PubMed  CAS  Google Scholar 

  50. Ploos van Amstel JK, Jansen RPM, de Jong JGN, Hamel BCJ, Wevers RA (1994) Six novel mutations in the α-galactosidase A gene in families with Fabry disease. Hum Mol Genet 3(3):503–505

    Article  PubMed  CAS  Google Scholar 

  51. Dobrovolny R, Dvorakova L, Ledvinova J, Magage S, Bultas J, Lubanda JC et al (2005) Relationship between X-inactivation and clinical involvement in Fabry heterozygotes. Eleven novel mutations in the α-galactosidase A gene in the Czech and Slovak population. J Mol Med 83(8):647–654

    Article  PubMed  CAS  Google Scholar 

  52. Germain D, Biasotto M, Tosi M, Meo T, Kahn A, Poenaru L (1996) Fluorescence-assisted mismatch analysis (FAMA) for exhaustive screening of the α-galactosidase A gene and detection of carriers in Fabry disease. Hum Genet 98(6):719–726

    Article  PubMed  CAS  Google Scholar 

  53. Rosenberg KM, Schiffman R, Kaneski C, Brady RO, Sørensen SA, Hasholt L (2000) Five novel mutations in fourteen patients with Fabry disease. Hum Mutat 15(2):207–208

    Article  PubMed  CAS  Google Scholar 

  54. Morrone A, Cavicchi C, Bardelli T, Antuzzi D, Parini R, Di Rocco M et al (2003) Fabry disease: molecular studies in Italian patients and X inactivation analysis in manifesting carriers. J Med Genet 40(8):e103

    Article  PubMed  CAS  Google Scholar 

  55. Yasuda M, Shabbeer J, Benson SD, Maire I, Burnett RM, Desnick RJ (2003) Fabry disease: characterization of α-galactosidase A double mutations and the D313Y plasma enzyme pseudodeficiency allele. Hum Mutat 22(6):486–492

    Article  PubMed  CAS  Google Scholar 

  56. Davies JP, Winchester BG, Malcolm S (1993) Mutation analysis in patients with the typical form of Anderson-Fabry disease. Hum Mol Genet 2(7):1051–1053

    Article  PubMed  CAS  Google Scholar 

  57. Meaney C, Blanch LC, Morris CP (1994) A nonsense mutation (R220X) in the α-galactosidase A gene detected in a female carrier of Fabry disease. Hum Mol Genet 3(6):1019–1020

    Article  PubMed  CAS  Google Scholar 

  58. Yang CC, Lai LW, Whitehair O, Hwu WL, Chiang SC, Lien YH (2003) Two novel mutations in the α-galactosidase A gene in Chinese patients with Fabry disease. Clin Genet 63(3):205–209

    Article  PubMed  Google Scholar 

  59. Germain DP, Poenaru L (1999) Fabry disease: identification of novel α-galactosidase A mutations and molecular carrier detection by use of fluorescent chemical cleavage of mismatches. Biochem Biophys Res Commun 257(3):708–713

    Article  PubMed  CAS  Google Scholar 

  60. Politei JM, Pagano MA, Dubrovsky A, Pereira F, Matte U, Burin M et al (2005) Neuropathic pain in a young female patient with Fabry’s disease: a new mutation of the α-galactosidase A gene. Rev Neurol 41(8):506–507

    PubMed  CAS  Google Scholar 

  61. Redonnet-Vernhet I, Ploos van Amstel JK, Jansen RP, Wevers RA, Salvayre R, Levade T (1996) Uneven X inactivation in a female monozygotic twin pair with Fabry disease and discordant expression of a novel mutation in the α-galactosidase A gene. J Med Genet 33(8):682–688

    Article  PubMed  CAS  Google Scholar 

  62. Kotanko P, Kramar R, Devrnja D, Paschke E, Voigtlander T, Auinger M et al (2004) Results of a nationwide screening for Anderson-Fabry disease among dialysis patients. J Am Soc Nephrol 15(5):1323–1329

    Article  PubMed  CAS  Google Scholar 

  63. von Scheidt W, Eng CM, Fitzmaurice TF, Erdmann E, Hübner G, Olsen EGJ et al (1991) An atypical variant of Fabry’s disease with manifestations confined to the myocardium. N Engl J Med 324(6):395–399

    Article  Google Scholar 

  64. Lai L, O’Meara M, Lien YH (2001) Disease: Fabry disease. Hum Genet 109:468–469

    Article  Google Scholar 

  65. Calado J, Dickson J, Rueff J (2004) Disease: Fabry disease. Hum Genet 115:347–356

    Google Scholar 

  66. Beyer EM, Karpova EA, Udalova OV, Ploos van Amstel JK, van Diggelen OP, Tsvetkova IV (1999) The multiple cases of Fabry disease in a Russian family caused by an E341K amino acid substitution in the α-galactosidase A. Clin Chim Acta 280(1–2):81–89

    Article  PubMed  CAS  Google Scholar 

  67. Bernstein HS, Bishop DF, Astrin KH, Kornreich R, Eng CM, Sakuraba H et al (1989) Fabry disease: six gene rearrangements and an exonic point mutation in the α-galactosidase gene. J Clin Invest 83(4):1390–1399

    Article  PubMed  CAS  Google Scholar 

  68. Miyazaki T, Kajita M, Ohmori S, Mizutani N, Niwa T, Murata Y et al (1998) A novel mutation (E358K) in the α-galactosidase A gene detected in a Japanese family with Fabry disease. Hum Mutat (Suppl 1):S139–S140

    Google Scholar 

  69. Miyamura N, Araki E, Matsuda K, Yoshimura R, Furukawa N, Tsuruzoe K et al (1996) A carboxy-terminal truncation of human α-galactosidase A in a heterozygous female with Fabry disease and modification of the enzymatic activity by the carboxy-terminal domain. Increased, reduced, or absent enzyme activity depending on number of amino acid residues deleted. J Clin Invest 98(8):1809–1817

    Article  PubMed  CAS  Google Scholar 

  70. Germain DP, Salard D, Fellmann F, Azibi K, Caillaud C, Bernard MC et al (2001) Identification of a novel de novo mutation (G373D) in the α-galactosidase A gene (GLA) in a patient affected with Fabry disease. Hum Mutat 17(4):353

    Article  PubMed  CAS  Google Scholar 

  71. Galanos J, Nicholls K, Grigg L, Kiers L, Crawford A, Becker G (2002) Clinical features of Fabry’s disease in Australian patients. Intern Med J 32(12):575–584

    Article  PubMed  CAS  Google Scholar 

  72. Cariolou MA, Christodoulides M, Manoli P, Kokkofitou A, Tsambaos D (1996) Novel trinucleotide deletion in Fabry’s disease. Hum Genet 97:468

    Article  PubMed  CAS  Google Scholar 

  73. Serebrinsky GP, Pascucelli V, Politei JM (2006) Gene symbol: GLA. Disease: Fabry disease. Hum Genet 119(3):361

    PubMed  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Scott C. Garman .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2010 Springer Netherlands

About this chapter

Cite this chapter

Guce, A.I., Garman, S.C. (2010). The Structure of Human α-Galactosidase A and Implications for Fabry Disease. In: Elstein, D., Altarescu, G., Beck, M. (eds) Fabry Disease. Springer, Dordrecht. https://doi.org/10.1007/978-90-481-9033-1_2

Download citation

  • DOI: https://doi.org/10.1007/978-90-481-9033-1_2

  • Published:

  • Publisher Name: Springer, Dordrecht

  • Print ISBN: 978-90-481-9032-4

  • Online ISBN: 978-90-481-9033-1

  • eBook Packages: MedicineMedicine (R0)

Publish with us

Policies and ethics